HsaEX1045022 @ hg38
Exon Skipping
Gene
ENSG00000189180 | ZNF33A
Description
zinc finger protein 33A [Source:HGNC Symbol;Acc:HGNC:13096]
Coordinates
chr10:38009963-38012350:+
Coord C1 exon
chr10:38009963-38010605
Coord A exon
chr10:38010704-38010783
Coord C2 exon
chr10:38012298-38012350
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTGTTTTTCTCAGGTT
3' ss Score
12.32
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGAATTTTGTCTTCCTAAGAAAGGTACAGATAGACTAAAAGTATTTCCATTTAGTCAAGCAATTTTAATGTCACAGAGGAAATCATACGTGACATTTATTTTCTTCTTTCAGATTATGTCTAGTTCCTTACTGAGCTACAATTTCCGTTTATTGCTTTAACCATTTTGATGAAGTAGCTTTCCGGCCGCACCTTCCCCTTTTTTCCCCCGCTCCCAAAGAACCGCTGATAGCATGAAAGTCTTTTAAACTGTATGGACGAGATCTATTTCCTAACATTTAAACGGAAAATGACACGCAGCGGTCCTTTCCTTGAGCGTCTGCGTCTAAACTGCCCACAGACCTCCCCCGCAGTATATCCCTTTGGAGTGCCCCGGGGAAAGCCAGGGCTGCAGGCAGTTCCAGCACCAACTCAGACCGCATCTGCCCACTGCCTAGCGGGGCACTTCTCTACCAATCCGAAGGGCTGCTCGCCCGGCCTCACGGGAAAGGTAGTTTCCAG
Seq A exon
GTTTTGCGTGGGAGGCGGTCCCGGGATTTCAAGGGTCTACGCGCTTTTCTATGGCGAATGCAACCCGACGAGGGAGTGGG
Seq C2 exon
CTGTATCTTCAGAGTTGTCTCCGTCTTTCCAAGAACAGAACAAAATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189180_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.550 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCCCTTTGGAGTGCCCCG
R:
TGGAAAGACGGAGACAACTCT
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains