HsaEX1045121 @ hg38
Exon Skipping
Gene
ENSG00000185219 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr3:44458244-44469369:-
Coord C1 exon
chr3:44469269-44469369
Coord A exon
chr3:44464912-44465063
Coord C2 exon
chr3:44458244-44458364
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGCG
3' ss Score
11.8
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
Exon sequences
Seq C1 exon
TATACACACACCACCTGTGTAGACTGTGGAGTGGTTCTGCTGGCCACGAGGGACCAACACATTGCAAGTGGCTGGATCTTGTGAACCCTCCATCTCCATAA
Seq A exon
GCGGAGTCTCACTCTGTCGCCCAGGCTGGAATGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCGCCTGCCGGGTTCAAGCAATTCTGCTGCCTCAGCCTACCGAGTAGCTGGGACTACAGGCGCATGCCACCATGCTCAGCTAATTTTTA
Seq C2 exon
GTGGAGTCTCGCTCTTTCGCAAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAGCCTCCGCCTCCTGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185219-'6-3,'6-2,7-3
Average complexity
C3
Mappability confidence:
88%=75=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTGTGTAGACTGTGGA
R:
GTAGTCCCAGCTACTCGGGAG
Band lengths:
211-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains