HsaEX1045152 @ hg38
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr1:247306782-247313852:-
Coord C1 exon
chr1:247308475-247313852
Coord A exon
chr1:247307935-247308027
Coord C2 exon
chr1:247306782-247306882
Length
93 bp
Sequences
Splice sites
3' ss Seq
GAGTGTTTTTCTTCTCTCAGCAT
3' ss Score
6.19
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
TGTAGGCTCTGCACAAGCTGTTTGTGCAGGATGTGCGGAGTGTGCAGGAGCCTGTGGTGATGACTATAGAAAACCCACCACAGAAAGTGGGAATAAATATGGGGCTGGGGGAAGTGCTTGTCTCTGGCCATAGAGTGGGTGGAGTAGAACCCGGATCTACGTCGATTCTGTCTAGCGTCAGAGCTCATGTTTGTGGAGTTGGCCCATTTTGCCTTCAGGTTCATTCACTCAGCAGACACTTATTGAGTGGCCACCCCCTGCCAGTCCCCAGGACGGAGCCCAGGGCCGCCCCCAGATCGTAGCCTGGCATCTATTCGGATAGCACCCTCCCAGGTAGTGCTGTAGGTGCAAAACAAATCAATTTTTCCATTTCCTCCTCTGGAAAGACTCTCCAAGTCTCCAGCCATTCCAGGTAGAAGAAAGAAGGAAACGTGAGGAGCTGCAGGTGCCAGAGTTCCAGGCCTGCCCACAGACGGTGGTGCCTCAAAACACCTACCCAG
Seq A exon
CATGGATGGCCAGCATCCTGGCACAGAATCTTGGAACTGGGATTAAAGAGCAGGTTTCTGGCATACTGAAGCTGCACAGGACTCTTGGAAAGT
Seq C2 exon
CTGGGGCACCCGAGAGCTGAAGTCACTTGCCCAGAGTCCAGTGCTCACAAGCTGTAGGTGGTGGAGTGAAGATTTGAACTCAGGCTGGGCGCAGTGGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-'25-31,'25-30,26-31
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.188 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000294753fB30779
Main Skipping Isoform:
ENST00000294753fB8162
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTCTCCAGCCATTCCA
R:
TCCACCACCTACAGCTTGTGA
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains