HsaEX1045154 @ hg38
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:HGNC:23713]
Coordinates
chr1:247310324-247320898:-
Coord C1 exon
chr1:247312984-247320898
Coord A exon
chr1:247311799-247311946
Coord C2 exon
chr1:247310324-247310456
Length
148 bp
Sequences
Splice sites
3' ss Seq
GGCTCTTCTGCCCATCACAGGCC
3' ss Score
7.52
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CTTGGCCACCCAGCCAGGTAGCTGCCATGTGGATTTTGCCAAACAAGATAGGGATGAGGTGGATCCAAGAGCAGAAATAACAAAGCAGTGTGTCCACTGGCGCCTGGACCTGGGGTAGTCGGTCTCCTTTCTGTCTCTTCTATCTGCATGTGTTGCTTTGGGCTCTTCCCTCAGCCCCAGCTTCCACACCACCCCCCTCCCCTAGTGCTATGGTCTGAATGTTTTTGTGTTCCCCTCCCCACAGCTTTGACATGTTGAAATGCTAGCCCCCAAGCTGCTGGCATTAAGAGGTGGGGCACTGGGGAGATGATCAGGTTATAAGGGCAAATCCATCATAAATGGATTAGTGCCCTTCTAAAAGAGGCCTCAGAGAGCAGCCTTGCCCCTTCCACCATGTGAGAACACAATGAAATGATGACCATCTATGGAGCAAGGAACTGGGCCCTCACCAGAACCCAACTATGCTGGTATCAGCTGGGGACTTCCTAGCCTCCAGAACT
Seq A exon
GCCCAGAGCGCAAGACCCGCAGCAAGCAGGGGACCACAGCAGAGAGCCCCGCTTCAGTCACCCCTGAAGCCCTAGATGGTGGGGCCATCAGCGAAGTTCCAGCCCAAGAGAGCCTTGGGCTTCTGAAAGAGACAGAGCTGCCACAGAG
Seq C2 exon
AGTCGGGTTTCTCCATTCAAGGACATGATTTTATGCTTCTCTGAAGAGGATTGGTCCCTTCTAGATCCTGCCCAGACTGGCTTCTATGGAGAGTTCATCATTGGGGAGGATTACGGGGTCTCAATGCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714_MULTIEX1-5/5=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.084
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=73.3)
Main Inclusion Isoform:
ENST00000294753fB30780
Main Skipping Isoform:
ENST00000294753fB30779
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCCACCATGTGAGAAC
R:
TTGAGACCCCGTAATCCTCCC
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains