HsaEX1045177 @ hg38
Exon Skipping
Gene
ENSG00000197363 | ZNF517
Description
zinc finger protein 517 [Source:HGNC Symbol;Acc:HGNC:27984]
Coordinates
chr8:144798876-144800956:+
Coord C1 exon
chr8:144798876-144798937
Coord A exon
chr8:144799410-144799503
Coord C2 exon
chr8:144800856-144800956
Length
94 bp
Sequences
Splice sites
3' ss Seq
AACAGTCATTTCGTAAATAGCTG
3' ss Score
3.7
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGAACCGGAGCCTGAGAGCCGGGCGCCGTGCGCTCCTCCCCGCGCTGTCTCGGCGGCCCAGG
Seq A exon
CTGTTGGGTATTTAACTGTGAGCGTTCCGGTGCTGGGGACCCCGCAGTGAGCGAACAGCCCGCCTCGCCTCCAGGAGCATGAATTGTAATAGAG
Seq C2 exon
AGAGAACCTCACTCTGTCGCCCAGGCTGGAGTGCAGCGGGGCACACTTGGCTCACTGCAACCTCTGTCTACTCAAGCAGTTCTCCTGCCTCAGCCTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197363-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCGGAGCCTGAGAGC
R:
GAGGCTGAGGCAGGAGAACT
Band lengths:
159-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains