HsaEX1045225 @ hg38
Exon Skipping
Gene
ENSG00000186300 | ZNF555
Description
zinc finger protein 555 [Source:HGNC Symbol;Acc:HGNC:28382]
Coordinates
chr19:2841435-2850713:+
Coord C1 exon
chr19:2841435-2841575
Coord A exon
chr19:2842253-2842287
Coord C2 exon
chr19:2850587-2850713
Length
35 bp
Sequences
Splice sites
3' ss Seq
TCCCGGTTTTCCTTCTTGAGGAC
3' ss Score
2.28
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
CGAGCTCTGTCTAATCAGGCCCCTGGGACGGGACGCCTCTGTCCTAGCCGTGAGTGCCCCGCCTGCCCCTAGCGGTCCCTGGCGTCCCGGTTCCTGTCGCGCTCACCTGCGCCGGTAGCGAAGAAATCGCCCCGGGACATG
Seq A exon
GACTTCTTGTCCCCTCTGACCCCAAGATGCCTGGG
Seq C2 exon
GACTCAGTGGTCTTTGAGGATGTGGCTGTGGACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTGGAGACCTTTCAGAACCTGGCCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186300_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000334241fB30813
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAATCGCCCCGGGACAT
R:
AGGTCTCCAGCATCACATCTCT
Band lengths:
128-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains