HsaEX1045242 @ hg38
Exon Skipping
Gene
ENSG00000189042 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr19:36712781-36723252:+
Coord C1 exon
chr19:36712781-36712867
Coord A exon
chr19:36719753-36720561
Coord C2 exon
chr19:36723189-36723252
Length
809 bp
Sequences
Splice sites
3' ss Seq
TATGAATGTCTGCAATGTAGGAA
3' ss Score
5.76
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGTCACATGACCAAACCTGATGTGATCCTCAAGTTGGAACGAGGAGAAGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGG
Seq A exon
GAATGCCTTCAGATTGAAGTCACACCTCATTCGTCATCAGAGAACTCACACGGGAGAGAAACCATATGAGTGTAATGACTGTGGGAAGTCCTTCCGCCAGAAGACAACACTCTCTCTACATCAGAGAATCCATACAGGTGAGAAACCCTACATTTGTAAAGAATGTGGGAAGTCCTTTCACCAGAAGGCAAATCTTACTGTACATCAGAGAACTCATACAGGGGAAAAGCCCTATATTTGTAATGAATGTGGGAAATCCTTCTCCCAGAAGACAACCCTTGCTCTTCATGAGAAAACTCATAATGAGGAGAAACCCTATATTTGTAGTGAATGTGGAAAGTCCTTCCGCCAGAAGACAACCCTTGTAGCACATCAGAGAACACATACAGGGGAGAAATCTTATGAATGTCCTCACTGTGGGAAGGCCTTTAGAATGAAGTCATACCTCATTGATCATCACCGAACTCACACAGGAGAGAAACCATATGAATGTAATGAATGTGGTAAATCATTCAGTCAAAAGACAAATCTCAATCTACATCAGAGAATTCATACAGGGGAGAAACCCTATGTTTGTAATGAATGTGGGAAGTCCTTTCGCCAGAAAGCAACCCTCACTGTACATCAGAAAATACATACCGGCCAGAAATCCTATGAATGTCCTCAGTGTGGGAAAGCCTTTAGCAGGAAGTCATATCTCATTCATCATCAAAGAACTCATACGGGAGAGAAACCATATAAATGTAGTGAATGTGGAAAGTGCTTCCGCCAGAAGACAAATCTTATTGTACATCAGAGAACTCACACAG
Seq C2 exon
GTGGAGAGGATGGCCTAACTGGATGTTTATCCTAGCGTCAACCCACCAAAGATTTGGGGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189042_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000591308fB30822
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains