HsaEX1045292 @ hg38
Exon Skipping
Gene
ENSG00000196458 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
Coordinates
chr12:132933035-132945797:-
Coord C1 exon
chr12:132945621-132945797
Coord A exon
chr12:132941732-132941944
Coord C2 exon
chr12:132933035-132933155
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCGTCTATTTGAGGCTTCAGAAA
3' ss Score
-1.41
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
GCAATAGCCCTCTGGAACAAGACAATTCATGTGAGATAAGAAAGAAGAGCCCACAAGACCAAGGATGTATTCTCAGTTTACAGACCACTGACCAGAGGCCACTCCAGGGTGTCAGGACTAAGAGAAGTCACAAAACAGCAGATTTCCCAAGAGCAGCGGAAAATGATCCAGTCACAG
Seq A exon
AAAGGGGATGAAAGGGCCTTGCACCGTGCCCCGTGGAGTCTGAGGTGTCTGTAACTGGAGAAGAAGAGTGCGTGATGGAGGGCAGCCTGGAGAAGAAGGACGCGTGATGGAGGGCAGCCTCGAGAAGGAGCGTGACAGAGGGCAGCCTGGAAAAGGGCGCGTGACGGAGGGCAGCCCGGAGAAGAGGGACGCGTGACGGAGGGCAGCCTGGAG
Seq C2 exon
ATATCATTTGAGGATGTGGCTGTGGATTTCACGCTGGAGGAATGGCAGCTACTTAATCCTACTCAGAAGAACTTGTACAGAGATGTGATGTTGGAGAACTATAGCAATCTGGTTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196458_MULTIEX1-1/5=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
ENST00000360187fB30843
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATAGCCCTCTGGAACAAGA
R:
AAACCAGATTGCTATAGTTCTCCA
Band lengths:
292-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains