HsaEX1045307 @ hg38
Exon Skipping
Gene
ENSG00000213020 | ZNF611
Description
zinc finger protein 611 [Source:HGNC Symbol;Acc:HGNC:28766]
Coordinates
chr19:52728730-52735054:-
Coord C1 exon
chr19:52735001-52735054
Coord A exon
chr19:52729906-52730005
Coord C2 exon
chr19:52728730-52728831
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTCTATATTTTTTGCACAGTTG
3' ss Score
7.2
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
AGATTAACGCAAACCCGGAAGCGGATCGGGTGGAGTGTAGGTCATATCGCCGCG
Seq A exon
TTGACTAGATAACGAAGGACAATGCATATATACAAAATTGCTGTATTGCCTGGTGATATGCAGCTGTACCTGTGACATCATAATTGCACCCTCCGACATG
Seq C2 exon
ATATCTCTTCCAAATGCTTGATGAAAAAGGTGGGAGGATCACTTGAGCCAGGGAGTTGAAGGCTGCAGTGAGCCCTGTTTTTGCCACCACACTCCAGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213020_MULTIEX2-1/10=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTAACGCAAACCCGGAAGC
R:
CAAGCTGGAGTGTGGTGGC
Band lengths:
154-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains