HsaEX1045318 @ hg38
Exon Skipping
Gene
ENSG00000176024 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:HGNC:25827]
Coordinates
chr19:51929732-51940335:+
Coord C1 exon
chr19:51929732-51929896
Coord A exon
chr19:51936028-51936235
Coord C2 exon
chr19:51940209-51940335
Length
208 bp
Sequences
Splice sites
3' ss Seq
CAAATCAATTTACTCTTCAGCCC
3' ss Score
4.17
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AGATGGCATCTCACTATGTTGCCCAGGCTGATCTTGAACTCCTGACCTCAAGTGATCCTCTCTCCTTGGCCTCCTAAAGTGCTGGGATTCCAGGTGTGAGCCACTTCACCCAGCCACATTTATCCATCTTGTAAAATATTGCTTTGTTTTTTGGTGCATTTCAAA
Seq A exon
CCCACAGGTCCTGACTTCAGGAGCAAGACACTTCAAGTGAGGTGAGGAGGAGGTTCCAGGACCTGGATACCATCCTTTGCAGGGATGTAATTCACCAGAGACCAAGATTTCTAGCCAGAAATTGAGGGCAGCTCAAGGAGAGACTACAGACACAGCATCCTACTTACTGGCTATTTCCCAGTAACAAAAGAAAATGATCAAGTCCCAG
Seq C2 exon
GAATCACTGACCCTGGAGGATGTGGCTGTGGAGTTCACTTGGGAGGAGTGGCAGCTCCTCGGCCCTGCTCAGAAGGACCTGTACCGAGACGTGATGTTGGAGAACTATAGCAACCTCGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176024-'6-6,'6-4,11-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCATCTCACTATGTTGCC
R:
CCACTGACACGAGGTTGCTAT
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains