HsaEX1045332 @ hg38
Exon Skipping
Gene
ENSG00000183309 | ZNF623
Description
zinc finger protein 623 [Source:HGNC Symbol;Acc:HGNC:29084]
Coordinates
chr8:143636162-143641541:+
Coord C1 exon
chr8:143636162-143636415
Coord A exon
chr8:143640579-143641432
Coord C2 exon
chr8:143641441-143641541
Length
854 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTGTCATTTCAACAGTGT
3' ss Score
8.07
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGACGGGGGCGGGCAACGCCTTAGCCGCAGCCCCGGCTGGCTCCGGAGCCCGGCCGCCTTGCCAGGGCACAGTCCGCCGAGAGGGCCGGGCGGGGTCCGCAGGCCGCTGCCCGCCCCGCTAGGGCGTCCAGGAGCGGGGCCTTGGCTAGTCAGTCTCCCGGACGCAGCCACGGCCGCCCCCGCGAGGCTGCGGCGTCTCTCCAGCGAGCCCGCCTCGGGCCCGAGCCTGGGGTCTTGTCCCTGAGGAGCGCCGT
Seq A exon
TGTTCACGGCATCTTCACCAGGAGCAGATTCCATGTCAAGAAGCGTACTTGTTTTCCTCATCTCTAAGAAGCAACACCTCAGCCGGGCATGGTGGCTCGTGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATAGCCAAATCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCACTCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCACCACTCCACTCTGCCTGGGGAACGAGAGTGAAACTCTGTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGCAGCACCTCATCCATTCAAGTTTGATCACGAGATTGAAGCAATTCAGTGACATCTTTAGGCTACACTTCTAAATCTAGCTCTCTTGCTATTTTCACCACATCTATAGTTGCTTCCTCCACTGAAGTCTCAAACCCCTCAAAGATTCATGAGGGCTGGAATCAGGTTTTTCCAAAATACCAAATGTTGATGTTTTGACCTCCTCCCATAAATCATGAATGTTCTTCGTGGCATCTATAATGATGACTCCTTTCCAGAAGGTTTTCGGCTGACTTTGCCCAGATCCATCAGAGGAATCATTATGGCACCTACAGCCTTGTGAAACATATTTCTTAATAAGACTTGAAAGTTGGAGTGACTCCCAGCCAGGGGCTGCAGAATGCACGTTGTGTTGGCAAAAGAAGAACATCAGTCTCCCTGTTCATCTCCATCAGAGCTCTTGGGTGACCAGGAGCATTGTCA
Seq C2 exon
TGTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183309-'1-2,'1-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGCCTTAGCCGCAGC
R:
GTGAGCCGAGATCCCGCC
Band lengths:
342-1196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains