HsaEX1045333 @ hg38
Exon Skipping
Gene
ENSG00000197566 | ZNF624
Description
zinc finger protein 624 [Source:HGNC Symbol;Acc:HGNC:29254]
Coordinates
chr17:16649658-16653853:-
Coord C1 exon
chr17:16653764-16653853
Coord A exon
chr17:16653568-16653665
Coord C2 exon
chr17:16649658-16649746
Length
98 bp
Sequences
Splice sites
3' ss Seq
CGTGGCCGTTCCCTCTAGAGCCC
3' ss Score
-0.16
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGGCCGGCACCGCCGAGCCGCCGCCATTGCTGGAAGCGTTCCCGCCCTGCTCTGCGAGTTCCCTCAGTTGTCCTCAGTTCGGCCGCCAG
Seq A exon
CCCCTGTCCCTGAGCGGACCCGCCCACTCCTGAGAGGCGATTGGGGCTGGGCCTCCTTCCCGAGTGTGGGTTCAGTCTCCAGCTGGCCTCCCTCACAG
Seq C2 exon
GTATGTCTTTGCAAGACTCCACTCTTTCCAGAGAGGGGAAACCAGAGGGAGAGATTATGGCTGCTGTGTTTTTCTCAGTTGGACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197566_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGCCATTGCTGGAAG
R:
AGGCGTCCAACTGAGAAAAACA
Band lengths:
159-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains