HsaEX1045340 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71400478-71402087:+
Coord C1 exon
chr2:71400478-71400518
Coord A exon
chr2:71401564-71401737
Coord C2 exon
chr2:71401956-71402087
Length
174 bp
Sequences
Splice sites
3' ss Seq
GAACTTGTGTTTTAAAACAGTGG
3' ss Score
4.82
5' ss Seq
ATGGTATAA
5' ss Score
2.05
Exon sequences
Seq C1 exon
ATGCTGCTTTGGAGGCCACAGAGAATGAACCACTTAACAAG
Seq A exon
TGGGTGACAGCTGCTTGGGTGGCTGAGACACAAGAATCACTTGAACCTGGGAGACAGAGCTTGCAGTGAGCCGAGGTTGTACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTAAAAAAAAAAAACAGTGGGTGAAAAAGAGTCCAGCAGACCTCGACTAGATGACAGATG
Seq C2 exon
GAAACAGAAGAAATGTGTGTGATGCTTGTCTCTAATTTGCCTAATAAAGGATATTCTGTAGAAGAAGTTTATGACTTAGCAAAACCATTTGGTGGTTTAAAGGATATCTTGATTTTATCATCTCATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138931=RRM_5=PU(37.5=47.7)
Main Inclusion Isoform:
ENST00000264447fB30864
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCTTTGGAGGCCAC
R:
ATCAAGATATCCTTTAAACCACCAAA
Band lengths:
154-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains