HsaEX1045371 @ hg38
Exon Skipping
Gene
ENSG00000251192 | ZNF674
Description
zinc finger protein 674 [Source:HGNC Symbol;Acc:HGNC:17625]
Coordinates
chrX:46523030-46528445:-
Coord C1 exon
chrX:46528335-46528445
Coord A exon
chrX:46525343-46525438
Coord C2 exon
chrX:46523030-46523125
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGTATTTTTAGTAG
3' ss Score
7.28
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGCATCTAGTTGGGAAGCCAGATGTGATCTTCAGGTTGGGACCAGGTGACGAGTCCTGGATGGCAGATGGAGGGACCCCGGTACGGACCTGTGCAGGTGAGGACAGGCCAG
Seq A exon
TAGAGATGGGGTTTCTCCATGTTCATCAGGCTGGTCTCGAACTCCCAGCCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
Seq C2 exon
AAAGAAATCCTTATTGATTACTATATCTTGCATACAGAAGAGCATTTAGAACACGTGCGTACTTTTCAGAAGAAATATATAGCTAACACCTGGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251192_MULTIEX1-4/7=3-5
Average complexity
C1
Mappability confidence:
97%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.008 C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000414387fB8209
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTAGTTGGGAAGCCAG
R:
ACGCACGTGTTCTAAATGCTCT
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains