HsaEX1045382 @ hg38
Exon Skipping
Gene
ENSG00000197124 | ZNF682
Description
zinc finger protein 682 [Source:HGNC Symbol;Acc:HGNC:28857]
Coordinates
chr19:20004636-20023099:-
Coord C1 exon
chr19:20023004-20023099
Coord A exon
chr19:20007141-20007275
Coord C2 exon
chr19:20004636-20004747
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGTTAATTTCATATTTCAGCTA
3' ss Score
7.81
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTCTTACTGTTTCTAAGCCAGAACTGATTAGCCGTCTGGAGCAAAGACAGGAGCCCTGGAATGTGAAGAGACATGAGACCATAGCCAAACCCCCAG
Seq A exon
CTATGTCTTCTCATTACACTGAAGACCTTTTGCCAGAACAGTGCATGCAAGATTCATTCCAAAAAGTGATACTGAGAAGATATGGAAGCTGTGGACTTGAGGATTTACACTTAAGGAAGGATGGGGAAAATGTGG
Seq C2 exon
TGTCTGTATGAAAGCATGTGGTCAATTTCTGCTGCTCGGGGTTTGAGAAGTTCTATATTAGGATGTCATTTACATACTTTTCAACAGAAGATTGAGGACACTGAAATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197124_MULTIEX1-9/11=6-11
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.016 C2=0.059
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTACTGTTTCTAAGCCAGAACTG
R:
TTTCAGTGTCCTCAATCTTCTGT
Band lengths:
202-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains