HsaEX1045396 @ hg38
Exon Skipping
Gene
ENSG00000167562 | ZNF701
Description
zinc finger protein 701 [Source:HGNC Symbol;Acc:HGNC:25597]
Coordinates
chr19:52570275-52574162:+
Coord C1 exon
chr19:52570275-52570330
Coord A exon
chr19:52572565-52572678
Coord C2 exon
chr19:52574077-52574162
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTATCCCTTCCAGGCC
3' ss Score
11.74
5' ss Seq
CATGTCAGT
5' ss Score
2.02
Exon sequences
Seq C1 exon
ACACATCCGCGCAGACCAGGAAGCGGATCCCGTGGAGTGAAGGTCGCACCGCGGCG
Seq A exon
GCCACCATGTAAGAATTCCGTTACATCTTTTCACTCATCTCAGACCTTCTCAGCGTGACTCGGTGAAAATGTCCCCGTTCTGAGGATGTCACAGCTAAATCTAAAGCAGATCAT
Seq C2 exon
GATTGACTTCTAAAGACTTGGTACGTGAGGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167562_MULTIEX1-3/4=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.545
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATCCGCGCAGACCAG
R:
AGAAGAGCCATCCCTGACTCC
Band lengths:
138-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains