HsaEX1045409 @ hg38
Exon Skipping
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr8:143695280-143709308:+
Coord C1 exon
chr8:143695280-143695373
Coord A exon
chr8:143695589-143695772
Coord C2 exon
chr8:143709253-143709308
Length
184 bp
Sequences
Splice sites
3' ss Seq
TCTCAAAAAAAAAATTCCAGCCA
3' ss Score
0.47
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
GTGTCTGCTTATCCAGCCAGAAATAAAAATCTGCCAGTGGTGTTCCCAAGGGAAGACCCCCGTGGGAATGGGTCGGGACACTGCCGTGTTTCAG
Seq A exon
CCAACAGATGCATATGTAATGTTGGAATCAGAAACGAGTTTACAAGAAATAGGGGGATGAGGAGAAGGTTGAACACACCGAGAGGAAGCCCTGAGCCAGATCCGGCTGGAGATGCCACCAGACGGCGACGTTTCTGTGGGAAGACGGGCACGCAGAAAGGCCGAGGGGGCTGTGTGTGACCCTG
Seq C2 exon
GTCCTGCACACCCATGAAGCGACTGACCCAGCTGGTCTGAAGCACCCCACGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135_MULTIEX3-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCAGAAATAAAAATCTGCCA
R:
CTCCTCGTGGGGTGCTTCAG
Band lengths:
138-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains