Special

HsaEX1045412 @ hg38

Exon Skipping

Gene
ENSG00000140548 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:HGNC:25352]
Coordinates
chr15:90001392-90068595:+
Coord C1 exon
chr15:90001392-90001614
Coord A exon
chr15:90003383-90003464
Coord C2 exon
chr15:90067110-90068595
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTCACAAAACTCCCCCACAGGTG
3' ss Score
7.94
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
TCCAGGGAGGGAGAGAGCGCGAGCGAGAGAGCGAGCGAGAGGAGGGGGGAGAGAGAGAAAGAGAGGAGCCGGAGGGAGGGCGGCAGGAGCAGGCGGCGGGCGCGCGTGGAGGCGGGCGGCGGGCGCACAGCAGCAGCCCGGGCGGTGGGCAGCCAGGAGCCCCCGGCCCGGCCCGGCCCGGCCCGCCGAGGGCCCCAGCGCAGGAGCCGCGCCCGGACCCAGG
Seq A exon
GTGTGCGGAGAAGGACTTTGTGCTCTTGGGGGTCACTCAGCCAGCTTTGAAGCTGCCCTCTCAGTCCTGCATTTGTACACGT
Seq C2 exon
CGATGCCCTCCTAGCTAGCCGTCACGGGATGGAGGGCTTCATGGACTCAGGGACACAGACGGACGCCGTGGTGGTGCTGTCCTTGGCTCAGGCCGCCGTGCTTGGCCTGGTCTCCGAAAATGAGCTCTTTGGAGCTACCATAAGCGCCGAGGCCTTCTACCCGGACCTGGGGCCCGAGCTTTCAGGGGCAGCCATGGGAGAGCCCGAGCCACCAGGCCCCGACGTCTACCAGCTGGCCTGCAACGGGAGGGCCTTGGAGGAGCCGGCGGAGGAGGAGGTGCTGGAGGTGGAGGCAGCCTGTGAGAAGCACACCCGGCGGAAGACGCGGCCACCTGTGCGGTTGGTGCCCAAGGTCAAGTTCGAGAAGGTGGAGGAGGAGGAACAGGAGGTCTATGAGGTTTCTGTGCCAGGTGACGACAAGGACGCAGGGCCAGCAGAAGCCCCCGCCGAGGCGGCCAGTGGCGGCTGCGACGCCCTGGTGCAGAGCAGCGCCGTCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140548_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.387
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=PU(36.0=1.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAGAGAGGAGCCGGAG
R:
GGCTAGCTAGGAGGGCATCG
Band lengths:
190-272
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains