HsaEX1045454 @ hg38
Exon Skipping
Gene
ENSG00000196350 | ZNF729
Description
zinc finger protein 729 [Source:HGNC Symbol;Acc:HGNC:32464]
Coordinates
chr19:22286408-22303884:+
Coord C1 exon
chr19:22286408-22286555
Coord A exon
chr19:22303203-22303290
Coord C2 exon
chr19:22303758-22303884
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATCTTTGTTTACAGGCC
3' ss Score
10.45
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GATGTGGCGGGGCCGTTGTTTCTGGTTGCAGCCGCAGTTCCCGGTCTCGCCTTCACTGCTGTGTGTCCTCAGCCTCTGTGGCCCTGTAACCTGCGGCATTGGAAGATCCACAGCTAACATGCCAGGTGCCCCTGGCAGCCTAGAAATG
Seq A exon
GCCAGAAAAACTGGGAAAAACACAGGTTCCCCCACTTGCTGAATGTTTGACAAAAGATTCTTTTTTGGGCCAAAAACAGGCATCACTG
Seq C2 exon
GGACCATTGACATTTAGAGATGTGACCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGACACGGTTCAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196350-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000601693fB30932
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACTGCTGTGTGTCCTC
R:
ATTCTGCTGAACCGTGTCCAG
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains