HsaEX1045490 @ hg38
Exon Skipping
Gene
ENSG00000196597 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr9:96870263-96875574:-
Coord C1 exon
chr9:96875468-96875574
Coord A exon
chr9:96874469-96874578
Coord C2 exon
chr9:96870263-96870363
Length
110 bp
Sequences
Splice sites
3' ss Seq
GGTGATGTCATTATCTCCAGAAA
3' ss Score
5.35
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTTTATAAACGTTGACCAAAGTGCCAGAACTCGTGGGCGCTGTGTCTGTGGCAAGACCCCGAGCTGTGGAGACCGAAAGAGCTGCATAAATTCCAGCTTTATTACCT
Seq A exon
AAACCACTAGAGTCTGTGACAGTGGAATGCCTGGACCAGCTTTGAGAAGACCAAGGGGAGACAGGAGGCCACTTCAAAGGAGAGCTTGTGGGGAGGTCTAGGGGTAAGAG
Seq C2 exon
GAGAGGATGGCCTTAAGGCACTGAAGATCAATTAAATCATCAGAACTCAAAGACCTTTTCCTTTTGTTGGCAGTACCATAGAAGTCTTTGTCTTCCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196597-'0-2,'0-1,1-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000498811fB30949
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGTTGACCAAAGTGCCAG
R:
AGGTTGGAAGACAAAGACTTCT
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains