HsaEX1045505 @ hg38
Exon Skipping
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:HGNC:13153]
Coordinates
chr9:127435908-127445371:+
Coord C1 exon
chr9:127435908-127436003
Coord A exon
chr9:127441377-127441580
Coord C2 exon
chr9:127444029-127445371
Length
204 bp
Sequences
Splice sites
3' ss Seq
AACTCATTTAATCCTCACAGTGA
3' ss Score
5.33
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTTCCAGTTTCCCAGCCTGGCATGAACTCCCAGTTGGAACAAAGGGAAGGCGCATGGATGCTGGAGGGCGAAGACCTGCGAAGTCCCTCTCCAG
Seq A exon
TGATTCTGTGAGGGAGCTGCTTTCACAGGTGATAAATCCAAGGTTTCAAAAGATTACACAATTTTCCCAAAGTCACAGAGCACGTAAGAGGTGGAGCCCAGATTTGAACCCAGCCAGTCTGGTTGAAGACTGTGTATAGAAATTCAAGGAAACAGTTGGGCGTGGTGGCTCACACCTGTAATCCGAGCACTTTGGGAGTCTGAG
Seq C2 exon
GCTGGAAGATTATATCTGGATCACCACCAGAGCAAGCCCTTTCTGAAGCTTCATTCCAAGACCCATGTGTAGAGATGCCCCCTGGGGATTCAGACCACGGGACCAGTGACCTTGAGAAGAGCTTCAATCTGAGACCAGTCCTCTCTCCGCAACAGAGAGTGCCCGTGGAAGCGAGACCTCGCAAATGTGAGACACACACCGAGAGCTTCAAGAACTCGGAAATCCTGAAACCTCACAGAGCAAAACCATATGCATGTAATGAATGTGGCAAAGCCTTCAGTTACTGTTCTTCCCTTTCTCAGCATCAGAAGAGCCACACTGGAGAGAAGCCCTATGAGTGCAGTGAATGTGGGAAGGCCTTCAGCCAGAGCTCATCTCTCATTCAGCACCAGAGGATTCACACTGGAGAGAAGCCTTACAAGTGCAGTGAATGTGGAAGAGCCTTCAGCCAGAACGCCAACCTCACCAAACACCAGCGAACCCACACCGGAGAGAAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7)
Main Inclusion Isoform:
ENST00000543471fB30957
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCAGTTTCCCAGCCTG
R:
GAAGCTCTCGGTGTGTGTCTC
Band lengths:
305-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains