HsaEX1045507 @ hg38
Exon Skipping
Gene
ENSG00000267254 | ZNF790-AS1
Description
ZNF790 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27617]
Coordinates
chr19:36797563-36801933:+
Coord C1 exon
chr19:36797563-36797811
Coord A exon
chr19:36801203-36801240
Coord C2 exon
chr19:36801876-36801933
Length
38 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTTATTCTTCTAGGTC
3' ss Score
10.78
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGGCGAGTGTGATTCCGCAGTCTTGGGCTGTTTGGCCAAGCGCCCGCCGGACATGGTACGCCGAAGGGTCATCGGCGTGGAGTCCTCGCTTTCAGCGTCCGCGGCTGGGAAATCGGCCATCGCTACGGCGGGAACTGGGACTCGGGCTGCGTCCCGGCCCTTCCACATCGGTCCACCGCACTCGTGGGCGCCCGCATTGGTGCTGACATAATTTCCTGACCTCTGACCCGTATTGTCTCGCGATTAAAG
Seq A exon
GTCCAGATTTGGAACAAATCTCTCTAGAGATTGAACAG
Seq C2 exon
AGCTGCGCCTGGATCCCTCAGCAGTGAGGAGACCTGAAGACCAGAGGAAACACAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267254_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCACATCGGTCCACC
R:
TCAGGTCTCCTCACTGCTGAG
Band lengths:
128-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains