HsaEX1045536 @ hg38
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:HGNC:13158]
Coordinates
chr19:52669737-52674253:-
Coord C1 exon
chr19:52674182-52674253
Coord A exon
chr19:52670869-52670947
Coord C2 exon
chr19:52669737-52670483
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTATTTTCTCTGAAGGCAGCCA
3' ss Score
-1
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GGTTTCTATGATGACAGGATGGTCCTAAGTCTTCACACATCAGGGCCACAGCCCCAACCTCACAGGAAACAG
Seq A exon
CCAGCAGAGGACTTCAAAAGAACCTTGGTCTCCAACATCTTTTATCTTAACCTGAACATTTCCTCTCTATTGATCCCAG
Seq C2 exon
AAAGGCAATTTACTTATATAGAAGGTTGTGCCCTCACAGAGGGAGCAATGGTGAGTGCGTACCTGAACAAGGGAGGGGAAGGGGTTATTTCTGATGCACATGGCCCTTGCTGCTGTGTCATTCCCCTATTGGCGAGGGTTAGACCACACAGGCTAATCTAATTCCAATTGGCTAATTTAAAGAGAGTGACAAGGTGAGTGGTTTGGCAGGAAAAATGTTATGGAATGAGGGTGGAGAATGAGTCAGGGTGGAGCAGGTAATCGGAGTGAGTCAGGGTGGGGCAGGTGATCAGAATGAGTCAAGGTGGAGCAGGTGATTGGAATGAGGCAGGGTGGAGCAGGTGATCAGAATGAGTCAAGGTGGAGCAGGTGATTGGAATGAGTCAGGGTGGAGCAGGTGATCGAAAAAGGTTGCTTTATGAGGAAGTTAAGTTTAAAAGTAGAAGGCAAAGAATTGAACATACTGACTTATTGATTCTTTGAAAAGAAATTTAGAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766-'6-12,'6-11,7-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACCTCACAGGAAACAG
R:
AGCCTGTGTGGTCTAACCCTC
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains