HsaEX1045541 @ hg38
Exon Skipping
Gene
ENSG00000124203 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:HGNC:16167]
Coordinates
chr20:59195869-59207056:+
Coord C1 exon
chr20:59195869-59196005
Coord A exon
chr20:59199499-59199601
Coord C2 exon
chr20:59206905-59207056
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATCATTTATCATTCTTCAGCTT
3' ss Score
7.21
5' ss Seq
TGAGTAAGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
TTCTCCTACCCAACAGTCCCAGGGGTGATGCCCCAGCACCAGGTGTCTGAGCCAGAATGGAAGAAAGGCCTGCCTTGGAGGGCAAAGATGTCTCGTGGGAACAGCAAGCAGAGAAAACTGAAGATCAACCCTAAAAG
Seq A exon
CTTGATTTTTAAGGTCAACATTGTGTTTTTGAAGATCTCATCGTGTCAGGACATACTGATCAAATTCATTCATTCTGATTGCTGTAGAGTGTCTCATCCATGA
Seq C2 exon
GTACAAAGGGAATTTCTTGCAGAGCTGTGTTCAGCTGAGAGCCAGTAGACTTCGCACACCAACCTGGGTGCGAAGAAGAAGCCGCCACCCTCCCGCACTTGAGGGACTGAAGCCATGCAGGACCCCTGGGCAGACCTCTTCAGAAATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124203_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=0.000 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000637017fB30973
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTGTCTGAGCCAGAAT
R:
TTCTGAAGAGGTCTGCCCAGG
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains