HsaEX1045556 @ hg38
Exon Skipping
Gene
ENSG00000236609 | ZNF853
Description
zinc finger protein 853 [Source:HGNC Symbol;Acc:HGNC:21767]
Coordinates
chr7:6617190-6624290:+
Coord C1 exon
chr7:6617190-6617307
Coord A exon
chr7:6617585-6617662
Coord C2 exon
chr7:6621122-6624290
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGTGTTTCCTGGCAGCCA
3' ss Score
8.47
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCGACTCCCGGGAATCGGGGTCTGACCGCCAGGATGGAAGTGGGGCCAGCCACCGAGACCTTCGTGCTGGAACTTCAATGTCTTGAGGATGGGGGCCCAGGGCCTGACACCCTCTCAG
Seq A exon
CCAGAGGGCCTCCACCATCCTCCCACCTGGCCCCAGCTCCTGAGTCAATTTCCACTCAATTTCCCGGATCCGATTCAG
Seq C2 exon
GTGGCAGCGGTGGGAGCGAGAGTCAGGAGGAGGAAGAGCCTCAGGAGAGGAACAGCAGTCCACAGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAACCCGGCCGGGACAACGAGAGTTGCAACTGCAGCAGTTAGAACAGCAGCCCGAGCCGCAGCAACAGCCGCAACACGAGCAGCTGCAACAGCCGCAGCCACACCTAGAACTGCAACAGCAGCCGCAGCAAGATGGGCAACAACAGCTATCTCAACTACAACAGGAAAAACACCAATCCGTGCACCATCAGGAACTGAAACCAGAACTGCAGCTAATGCACCAGCAGCAACAGTTACAGCCACAGCAAGTGCAAGAGCAACAGCGGTTGCAGCAGCAGCAGGAGCAGTTACAGACGCAGCAAGCACAAGAGCAACAGGTATTGCAGCAGCAGGAACAGCTACAGCAGCAAGTGCAAGAGCAACAGCTGTTACAGCAACAGCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236609_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Inclusion Isoform:
ENST00000457543fB30980
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCGTGCTGGAACTTCA
R:
TTCCTCAGCGATTTCACTGGC
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains