HsaEX1045647 @ hg38
Exon Skipping
Gene
ENSG00000176371 | ZSCAN2
Description
zinc finger and SCAN domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20994]
Coordinates
chr15:84603820-84623132:+
Coord C1 exon
chr15:84603820-84604333
Coord A exon
chr15:84620602-84620772
Coord C2 exon
chr15:84622646-84623132
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTCATTGTTTCAGATT
3' ss Score
10.16
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GATATTTGAGGAGGGAAGTGTCTTACCTGAGAGCCTGGCTGGAGAAGACTGAGGTCCAAGGCTTGAAGCCTAAGTGATTGCCCCAGGACTGTGGATGATGGCTGCAGACATCCCGAGAGTGACCACTCCGCTGAGCTCCTTGGTCCAGGTGCCTCAAGAGGAAGATAGACAGGAGGAGGAGGTCACCACCATGATCCTGGAGGATGACTCCTGGGTGCAAGAAGCTGTGCTGCAGGAGGATGGCCCTGAGTCTGAGCCCTTTCCCCAGAGTGCTGGCAAGGGCGGCCCCCAGGAGGAGGTGACCAGGGGACCACAGGGTGCACTCGGCCGCCTCCGAGAGCTCTGCCGGCGCTGGCTGAGACCAGAGGTACACACCAAGGAGCAGATGTTAACCATGCTGCCAAAGGAAATTCAGGCTTGGCTGCAAGAGCATCGGCCTGAAAGCAGTGAGGAGGCAGCGGCCCTGGTGGAAGACTTGACCCAGACCCTTCAGGACAGTG
Seq A exon
ATTTTGAGATACAGAGTGAAAATGGGGAGAACTGTAATCAAGACATGTTTGAGAATGAATCACGTAAGATATTCTCGGAAATGCCTGAAGGTGAAAGTGCTCAGCACTCCGATGGGGAAAGTGACTTTGAGAGAGATGCTGGCATCCAGAGGCTCCAGGGACACAGCCCAG
Seq C2 exon
AAAGTGTCAGGAGCACAGAAACTTGAGGAAGTACAGCCTGGAGCCAGTGTCCCAGTGTCCTTTCCATTGGTAAGAGTTGGACAGGGCCTTCAGGAAAGGGGTAAACCGAGGACATTTCAGTGCTTGCTTTTGTCTCTGCCTACTGTCCTGTGGTAGATCAGCTACCAGGGGAACACATTTGTTCTCGTGGGGTTTTGTCCTGGAGAGTGTAGTGAAGTCCGAGAGCCCTAGCTGCCAACCCATGGTGGATGGTAACTTCTGTCTCATCAAGAGTAAAACAGTCCTGCACACAGCAGGGTGGGTTTGTGCCTTTGGCCCAACAGGTACATAGCCCCATAATTTCTGAATTATTCTATGCACTTGTTTCCCTCTTCTTTTATTTTTTATTTGATATATGCCGAGCTAGAATCCTGTCGGGTAGCTTTTGTATACTAAGAACATTATTATTATTATTATTTTTGAGACGGAGTCTCACTCTGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176371_MULTIEX1-6/6=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=0.441 C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(95.5=62.2)
A:
PF0202312=SCAN=PD(3.4=5.2)
C2:
NO
Main Skipping Isoform:
ENST00000334141fB8272
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACCCAGACCCTTCAGGA
R:
AGGGCTCTCGGACTTCACTAC
Band lengths:
255-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains