HsaEX1046376 @ hg38
Exon Skipping
Gene
ENSG00000197768 | STPG3
Description
sperm-tail PG-rich repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:37285]
Coordinates
chr9:137251738-137252525:+
Coord C1 exon
chr9:137251738-137251895
Coord A exon
chr9:137252047-137252055
Coord C2 exon
chr9:137252437-137252525
Length
9 bp
Sequences
Splice sites
3' ss Seq
GCTGACCTGGAAGTCCCCAGCCC
3' ss Score
-3.59
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCCCAAGGCATCTGTGCTGTTGTTGGGCCCGGAGCCGGGGATGGCCTGGGATGAGACACAGCCCCCAAAGATGAAGGAGATCCCAGTTGGCCTCAGGTTACAGACGGGCACCCCCCAGGAGTCCCTGCCCACCTACACCCAGACCCTGAGGGAACTAT
Seq A exon
CCCCACCAG
Seq C2 exon
AGGGCGGTGGCCGCAGGGCATGGCAGACTTTGTGGTTCCAGAGCGAAAGCCCCTTCACGCAGAAAGCTGACTTCGACCAAGAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197768-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.936 A=0.750 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTACACCCAGACCCTGAG
R:
TGGTCGAAGTCAGCTTTCTGC
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains