HsaEX6000280 @ hg19
Exon Skipping
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1090782-1093933:+
Coord C1 exon
chr11:1090782-1090985
Coord A exon
chr11:1091472-1091489
Coord C2 exon
chr11:1092080-1093933
Length
18 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTGCTTTATTGCAGTTT
3' ss Score
8.41
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GAAAGATTCTTAACCAGACCCAGGATGGCGCCTTCTGCTACTGGGAGATCTGTGGCCCCAACGGGACGGTGGAGAAGCACTTCAACATCTGTTCCATTACGACACGCCCGTCCACCCTGACCACCTTCACCACCATCACCCTCCCCACCACCCCCACCACCTTCACCACTACCACCACCACCACCACCCCGACCTCCAGCACAG
Seq A exon
TTTTATCAACAACTCCGA
Seq C2 exon
AGCTGTGCTGCCTCTGGTCTGACTGGATCAATGAGGACCACCCCAGCAGTGGCAGCGACGACGGTGACCGAGAAACATTTGATGGGGTCTGCGGGGCCCCTGAGGACATCGAGTGCAGGTCGGTCAAGGATCCCCACCTCAGCTTGGAGCAGCTAGGCCAGAAGGTGCAGTGTGATGTCTCTGTTGGGTTCATTTGCAAGAATGAAGACCAGTTTGGAAATGGACCATTTGGACTGTGTTACGACTACAAGATACGTGTCAATTGTTGCTGGCCCATGGATAAGTGTATCACCACTCCCAGCCCTCCAACTACCACTCCCAGCCCTCCACCAACCAGCACGACCACCCTTCCACCAACCACCACCCCCAGCCCTCCAACCACCACCACAACCACCCCTCCACCAACCACCACCCCCAGCCCTCCAATAACCACCACGACCACCCCTCCACCAACCACCACTCCCAGCCCTCCAATAAGCACCACAACCACCCCTCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.000 C2=0.866
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF133301=Mucin2_WxxW=WD(100=29.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACCTTCACCACCATCAC
R:
GATCCAGTCAGACCAGAGGCA
Band lengths:
115-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)