HsaEX6005716 @ hg38
Exon Skipping
Gene
ENSG00000274391 | TPTE
Description
transmembrane phosphatase with tensin homology [Source:HGNC Symbol;Acc:HGNC:12023]
Coordinates
chr21:10524580-10538734:+
Coord C1 exon
chr21:10524580-10524688
Coord A exon
chr21:10527355-10527412
Coord C2 exon
chr21:10538681-10538734
Length
58 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTACTCTTTGGTAGAGT
3' ss Score
6.02
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAATGTTGGACCGACGACACAAGACCTCAGACTTGTGTTATTCTAGCAGCTGAACACACCCCAGGCTCTTCTGCCCGGCAGTGGCTCTGGAAGCAGTCTGGTGTATAG
Seq A exon
AGTTATGGATTCACTACCAGATTCTACTGTATGCTCTTGACAACTATGACCACAATGG
Seq C2 exon
TCCACCCACAAATGAATTATCAGGAGTGAACCCAGAGGCACGTATGAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000274391_MULTIEX3-2/9=1-5
Average complexity
C1
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.875
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGACACAAGACCTCAGAC
R:
CATACGTGCCTCTGGGTTCAC
Band lengths:
143-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains