HsaEX6005717 @ hg38
Exon Skipping
Gene
ENSG00000274391 | TPTE
Description
transmembrane phosphatase with tensin homology [Source:HGNC Symbol;Acc:HGNC:12023]
Coordinates
chr21:10527355-10541165:+
Coord C1 exon
chr21:10527355-10527412
Coord A exon
chr21:10538681-10538734
Coord C2 exon
chr21:10541112-10541165
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTGACATCCTCTAGTCC
3' ss Score
5.63
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGTTATGGATTCACTACCAGATTCTACTGTATGCTCTTGACAACTATGACCACAATGG
Seq A exon
TCCACCCACAAATGAATTATCAGGAGTGAACCCAGAGGCACGTATGAATGAAAG
Seq C2 exon
TCCTGATCCGACTGACCTGGCGGGAGTCATCATTGAGCTCGGCCCCAATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000274391-'8-5,'8-4,17-5=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.875 C2=0.211
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATGGATTCACTACCAGATTCT
R:
CATTGGGGCCGAGCTCAATG
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains