HsaEX6007420 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21627682-21629021:+
Coord C1 exon
chr7:21627682-21627819
Coord A exon
chr7:21628130-21628254
Coord C2 exon
chr7:21628826-21629021
Length
125 bp
Sequences
Splice sites
3' ss Seq
ACCAAAATATCAACTTGCAGATT
3' ss Score
7.17
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTTTTGACCATATTTGGAAATTTTCTAGAGAAGCCAGTTGTCATGGAAATTTTCAGCCTACATTACAGCACACTAGTGCATATGTTTAATACAGAGCTGGATGTGTGTAAGCAACTGTATAATGAACACATGAAACAG
Seq A exon
ATTGAATGTGGTCATGTAGTTCTTAACAAGAACATGCCATTTACCTCAGGAAATATGAAATGGGCCCAGCAGGTTCTCCAACGACTTCAAATGTTTTGGTCAAACTTCGCATCTCTCCGTTATCT
Seq C2 exon
ATTTTTGGGCAATCCTGATCACGCTTTAGTTTATCAAAAGTATGTTGAAATGACCACTTTGCTTGATCAATTTGAAAGTCGTATCTATAATGAATGGAAAAGTAATGTGGATGAAATCTGTGAATTCAATTTGAATCAACCCTTGGTTAAATTCAGTGCCATAAATGGTCTTCTCTGTGTCAATTTTGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.8=100)
A:
PF083857=DHC_N1=FE(7.1=100)
C2:
PF083857=DHC_N1=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCTACATTACAGCACACT
R:
TGGCACTGAATTTAACCAAGGGT
Band lengths:
247-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)