HsaEX6007600 @ hg38
Exon Skipping
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr7:29066023-29072423:-
Coord C1 exon
chr7:29072301-29072423
Coord A exon
chr7:29071773-29071904
Coord C2 exon
chr7:29066023-29066121
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTTTTTGTCCTCAGATT
3' ss Score
12.66
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TCTTATGCAGGGAAATATGTGCCAGCCATTGCACACCTCATCCATTCCCTCAACCCTGTGAGAGAGGTGAAGATCAACCTGAACGGAATTGCTATTGGAGATGGATATTCTGATCCCGAATCA
Seq A exon
ATTATAGGGGGCTATGCAGAATTCCTGTACCAAATTGGCTTGTTGGATGAGAAGCAAAAAAAGTACTTCCAGAAGCAGTGCCATGAATGCATAGAACACATCAGGAAGCAGAACTGGTTTGAGGCCTTTGAA
Seq C2 exon
ATACTGGATAAACTACTAGATGGCGACTTAACAAGTGATCCTTCTTACTTCCAGAATGTTACAGGATGTAGTAATTACTATAACTTTTTGCGGTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-'41-42,'41-38,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(16.7=100)
A:
PF0045017=Peptidase_S10=PU(31.8=95.5)
C2:
PF0045017=Peptidase_S10=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGGGAAATATGTGCCAGC
R:
CGTGCACCGCAAAAAGTTATAGT
Band lengths:
218-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains