HsaEX6015213 @ hg19
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:20823]
Coordinates
chr2:115220972-116066929:+
Coord C1 exon
chr2:115220972-115221003
Coord A exon
chr2:115464694-115464751
Coord C2 exon
chr2:116066815-116066929
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTCTGTGTTTCAGGAT
3' ss Score
12.85
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTATACATACATGAAGAGTGGCTTCAGGACTG
Seq A exon
GATCCATTGCTGTTTACATGGGCCCATTAAATGGAGTTATGACTATTTTCTAGTTTAT
Seq C2 exon
GAACTGGGAAGTAACAGCCCTCCACAGAGAAACTGGAAGGGAATTGCTATTGCTCTGCTGGTGATTTTAGTTGTATGCTCACTCATCACTATGTCAGTCATCCTCTTAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497-'2-14,'2-3,3-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059157=DUF872=FE(66.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATACATACATGAAGAGTGGCTTC
R:
TGGGGTTAAGAGGATGACTGACA
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)