HsaEX6016195 @ hg19
Exon Skipping
Gene
ENSG00000115221 | ITGB6
Description
integrin, beta 6 [Source:HGNC Symbol;Acc:6161]
Coordinates
chr2:161057647-161110360:-
Coord C1 exon
chr2:161110101-161110360
Coord A exon
chr2:161062374-161062584
Coord C2 exon
chr2:161057647-161057728
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACAACTGTATCTACTTCCAGGTT
3' ss Score
8.77
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
AAATCAACCAGACGTTCTGTCATTCACCAGCAATATCTCTCCATAGTATTCTACACCCATGTGCCTTCATGAAATATTTCATTATGCTGGTGGAAGAAATATTCAAATGAATGTGCTTTTTCAGGGATGGTGACACCAGAATGTTTTAAATCTGTTCATTACCACAACAAGGATAAATGGCGTTTCTGCCAAAGACTTTTGATAACGGGTGCAGTAATGCATGCCAGCACTTTCTGAAATTAAAGGTTCTACCCTGAGAG
Seq A exon
GTTGCTTGCTCCCCCTGTTATGTACAACCACAAGTCAGCCACAGAATTCTGCAAACAACCCACTGTGCAAGGCTTTGGAGCTACCTCAGAGTGAGACCCAGAGACAAAGCAGCCATTTACCTTGCCTTCTTTTAGCTACTCGCAATGAAACGTTTTCACAGAAAGACACCTGGAGGTGGAAGACTTGTCACCGGTACTTCAGATGAAGCAG
Seq C2 exon
GTTTCACATGCTTACCCAGGAATGCTCCTTGAAAAGATAATCTCCTCAGACATAAGCCTGGCCACAGAAAAGTCTCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115221-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATTCTACACCCATGTGCCT
R:
GAGACTTTTCTGTGGCCAGGC
Band lengths:
292-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)