HsaEX6016480 @ hg19
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169644371-169657717:+
Coord C1 exon
chr2:169644371-169644558
Coord A exon
chr2:169654665-169654732
Coord C2 exon
chr2:169657576-169657717
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTATTATTTTCAATCTACAGATG
3' ss Score
10
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATAAACTGAAGCACAAGAGGGTAAAAACTTTGTCCTTGGTCTTACAGCCAGAAAGTGGTGATGCAAAGAACTTAGTCCAAGCTTTGATCTGTTCTGCACTGCCTGCCAAAGCAGAACCTTGAGAAATACCCATGTTTGGGGGATGAGAAGAAGAAGATAAATCAGCAAAGAAAATAGTGATAAGAAAG
Seq A exon
ATGCAGAACCCAGGGATATGGAGAGCCAATTGTATTTGTAAAACACTTAGAATGGTGCCTGACACGTG
Seq C2 exon
AGTTGCTTTGTCTAATTCTAGCCCTGTGGTAGCTACCCAAGATTGTTGTAACCTCCAGTGATCAAGTTCTTTGGATAAGCAAAGAGGGAGGGCATTAAGTGTGTGGAAAAGACCCCTCCTCTCCACTCTTGTTGCAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAAGCAGAACCTTGAGA
R:
GCCCTCCCTCTTTGCTTATCC
Band lengths:
178-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)