HsaEX6016645 @ hg19
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:15576]
Coordinates
chr2:171400402-171508244:+
Coord C1 exon
chr2:171400402-171400498
Coord A exon
chr2:171503419-171503449
Coord C2 exon
chr2:171508138-171508244
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCTCTCGCCTCAGCCT
3' ss Score
8.65
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
CACTCGGTTTCTGGGACTGATTTGCTGTCTTCTCGGATATGCCATCCTGCTCCAGATCAGCAAGGATTGAGTCTCTGGGGAGCCCCTCAAAAGCCTG
Seq A exon
CCTTTCCACATTACGGATGTAACTTTTATGG
Seq C2 exon
GTTCAGAAAATGGTCTTGCACAGAAGCATCGAACACCTCGCCGACGATGTCAGCAGCCCAAAATGCTGAGTAGCCCTGAGGACACCATGTACTATAACCAGTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.000 C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTGAGTCTCTGGGGAGC
R:
ATGGTGTCCTCAGGGCTACTC
Band lengths:
123-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)