HsaEX6016648 @ hg19
Exon Skipping
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:15576]
Coordinates
chr2:171375948-171399476:+
Coord C1 exon
chr2:171375948-171376050
Coord A exon
chr2:171381015-171381136
Coord C2 exon
chr2:171399416-171399476
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTGTTTTTTGAGATG
3' ss Score
3.65
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TTCTCAGGGGCTCTGTACATCGTAGGAGCCATTCACAAGCAGAATCCAACAATGGCCGTACACAGACTTCAAGCAACTCTCCTGCTGTCACAGAGAAAAATGG
Seq A exon
ATGGAGTTTCACTCTGTTGCTCAGGCTGGAGTGCAATAGCATGATCTCAGCTGACTGCAACCTCCGCCCTCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG
Seq C2 exon
GCATTCACAAGCCCAGAGTTCTCCAAAAGGGTGCGATATCTTCGCAGGACATGCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-'36-38,'36-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.286 C2=0.730
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGGGCTCTGTACATCG
R:
CGAAGATATCGCACCCTTTTGGA
Band lengths:
146-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)