HsaEX6016847 @ hg19
Exon Skipping
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:8773]
Coordinates
chr2:178769825-178879187:-
Coord C1 exon
chr2:178879029-178879187
Coord A exon
chr2:178786458-178786685
Coord C2 exon
chr2:178769825-178769914
Length
228 bp
Sequences
Splice sites
3' ss Seq
TAATTCTTTTTCCCTTCCAGCTT
3' ss Score
9.75
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATCGACGATTCAATGATGAAATCGACAAGCTAACTGGATACAAGACAAAATCATTATTGTGCATGCCTATCCGAAGCAGTGATGGTGAGATTATTGGTGTGGCCCAAGCGATAAATAAGATTCCTGAAGGAGCTCCATTTACTGAAGATGATGAAAAA
Seq A exon
CTTCCTGTCTGTCAGATTTCCCCATTCATCAGGCCACAGACATTCTTGGGATGTAGCTAGGGAAGAAGTCCAGCTGTAGATACTTTTGAGTTTAGTAGGATAATTTTTATGGTTCCCAATCCCTTTTGTGGAAAGTTGTTGCTAGCTTTATGCTGTAGGAACGGCTTTTCTGAATATTCTTTTGCTCACCATCCCAGTTCACTCAACATCTTGATGCAGATATACAAG
Seq C2 exon
GTTATGCAGATGTATCTTCCATTTTGTGGAATCGCCATATCTAACGCTCAGCTCTTTGCTGCCTCAAGGAAAGAATATGAAAGAAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655-'3-9,'3-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.8=100)
A:
NA
C2:
PF0159021=GAF=PD(13.5=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGAAATCGACAAGCTAACTGGA
R:
TCTGCTTCTTTCATATTCTTTCCTTG
Band lengths:
236-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)