HsaEX6030796 @ hg19
Exon Skipping
Gene
ENSG00000186160 | CYP4Z1
Description
cytochrome P450, family 4, subfamily Z, polypeptide 1 [Source:HGNC Symbol;Acc:20583]
Coordinates
chr1:47534294-47548133:+
Coord C1 exon
chr1:47534294-47534435
Coord A exon
chr1:47546295-47546339
Coord C2 exon
chr1:47548006-47548133
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTTCTGTTTTACAGATC
3' ss Score
12.63
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
TTTTACCCAGTAAAGGAGTTTGAGGTGTATCATAAGCTGATGGAAAAATACCCATGTGCTGTTCCCTTGTGGGTTGGACCCTTTACGATGTTCTTCAGTGTCCATGACCCAGACTATGCCAAGATTCTCCTGAAAAGACAAG
Seq A exon
ATCCCAAAAGTGCTGTTAGCCACAAAATCCTTGAATCCTGGGTTG
Seq C2 exon
GTCGAGGACTTGTGACCCTGGATGGTTCTAAATGGAAAAAGCACCGCCAGATTGTGAAACCTGGCTTCAACATCAGCATTCTGAAAATATTCATCACCATGATGTCTGAGAGTGTTCGGATGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186160-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(3.3=100)
C2:
PF0006717=p450=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCATGTGCTGTTCCCTTG
R:
TCTGGCGGTGCTTTTTCCATT
Band lengths:
145-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)