HsaEX6032105 @ hg19
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:1105]
Coordinates
chr1:92414928-92428503:+
Coord C1 exon
chr1:92414928-92415239
Coord A exon
chr1:92415862-92416031
Coord C2 exon
chr1:92428275-92428503
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACCAAAAATACAAAAATTAGCTG
3' ss Score
-2.9
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TATAAAAGCGCCTGTCGCGCGACCGCCATTACAACAAAAACTGGCGGCGAGGAACTGCGGAGAACTGTTGCCCTGCACCGCTTCATTTTGTGCAGCCTGAAAGGGGCAATCACATAAGGTCGGTTTTGTAATATACAGGTAACATACAGGTAATGTACCCTCCACAGGGGGTGCTGCCTTAGGCCGGCCCCGAGGTGCGGCCTTGGGTGGGAACAACCGTTTTTTCCCCCCTCTCCCCTCCCCGACCCCATCAACATCGTGCGACAGTCCGGGCAGTTGAGAAGGCCACCCCGCTTCGTGCCTGCAGCCCAG
Seq A exon
CTGGGTGTGATGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAAGTTGCAGTGCGCCGAGATCACGCCAGTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCCCCGCTCCCCCCAAAAAAGAAAGAG
Seq C2 exon
GACATGTACTTGTAGACAGGATTCAAAGCAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTAACCCTCCTCCACCAGAATATATAAATACTAAGAAAAATGGGCGATTGACAAATCAACTTCAGTATCTACAAAAAGTTGTCCTAAAGGATTTATGGAAGCATAGTTTTTCATGGCCCTTTCAACGTCCTGTGGATGCTGTGAAACTACAGTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-'2-9,'2-4,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.055
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF087045=GCD14=PU(28.0=68.8),PF0043920=Bromodomain=PU(32.6=43.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTCCGGGCAGTTGAGAA
R:
GGACGTTGAAAGGGCCATGAA
Band lengths:
251-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)