HsaEX6035252 @ hg19
Exon Skipping
Gene
ENSG00000135847 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:23339]
Coordinates
chr1:180244515-180257652:-
Coord C1 exon
chr1:180257405-180257652
Coord A exon
chr1:180250441-180250521
Coord C2 exon
chr1:180244515-180244547
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTGTGATTTTAGCTG
3' ss Score
8.02
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CCTCTGCCTGTGAGTTTCTGGATATTGTAGAGCTGCTGCTCCAGTCTGGTGCTGACCCCACTCTCCGAGACCAGGATGGCTGCCTGCCAGAGGAGGTGACAGGCTGCAAAACAGTTTCTTTGGTGCTGCAGCGGCACACAACTGGCAAGGCTTAATCAAAAGACTGGAAAACTGCAGTCTGTAATAGCATAAGGCTTCCATTATGAAAGAAAACTACAAAAATAATACTTCTTTTCCACCCGTCTTTG
Seq A exon
CTGAGTAGAATCCTGGGCCCAAGGGGAAAGGACAGGAAAGCAATGGAACACCGACTGCGGAGCTTCCATTTGTTCTCCTGA
Seq C2 exon
TTTTGCTCATTTTACAGCCCACAGCCTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135847-'15-18,'15-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.7=44.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGACAGGCTGCAAAACA
R:
GCTGTGGGCTGTAAAATGAGC
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)