HsaEX6035732 @ hg19
Exon Skipping
Gene
ENSG00000134365 | CFHR4
Description
complement factor H-related 4 [Source:HGNC Symbol;Acc:16979]
Coordinates
chr1:196876446-196882052:+
Coord C1 exon
chr1:196876446-196876628
Coord A exon
chr1:196879411-196879608
Coord C2 exon
chr1:196881870-196882052
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTTGTTACAAGCAA
3' ss Score
4.43
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
ATTCTTCAGAAAACTGTGGGCCTCCTCCACCTATTAGCAATGGAGATACCACGTCCTTCCCGCAAAAAGTGTATCTGCCATGGTCAAGAGTCGAGTACCAGTGCCAGTCCTACTATGAACTTCAGGGTTCTAAATATGTAACATGTAGTAATGGAGACTGGTCAGAACCACCAAGATGCATAT
Seq A exon
CAATGAAACCTTGTGAGTTTCCAGAAATTCAACATGGACATCTATATTATGAGAATACGCGTAGACCATACTTTCCAGTAGCTACAGGACAATCTTACTCCTATTACTGTGACCAAAATTTTGTGACTCCTTCAGGAAGTTACTGGGATTACATTCACTGCACACAAGATGGGTGGTTGCCAACAGTCCCATGCCTCA
Seq C2 exon
GAACATGCTCAAAATCAGATATAGAAATTGAAAATGGATTCATTTCTGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAAATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGTTCAATTACATGTTTGCAAAATGGATGGTCAGCACAACCAATTTGCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134365-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.7)
A:
PF0008415=Sushi=PU(95.4=92.5),PF0008415=Sushi=PU(0.1=0.0)
C2:
PF0008415=Sushi=PD(3.1=3.2),PF0008415=Sushi=WD(100=95.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTACCAGTGCCAGTCCTA
R:
GCTGACCATCCATTTTGCAAACA
Band lengths:
258-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)