HsaEX6037011 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225460657-225488732:+
Coord C1 exon
chr1:225460657-225460827
Coord A exon
chr1:225477587-225477784
Coord C2 exon
chr1:225488571-225488732
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTATTTCTTTTCTCCCAAAGATT
3' ss Score
7.62
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTTCTCCTAGGATTGCTGCAAGCTGACAGGACTGTTGTTAACTCCAAAGAGATGGCTGCTCTGCTCTTTGTTCATGAAGCCACCCGAGTATTTCACGATCGCTTAATTGATTTCACTGATAAAAGCCTTTTCTATCGGTTGCTTTCAAGGGAACTTGAGAACTGTTTTCAG
Seq A exon
ATTGGAATAGATGGATGTGGGAAAAAAACATGTGCAACCTTGGCCTGTTATTTGACAGATAATAAACTATACCGAGTGCCTATATCTCACAAATGTGCCTACATCGAATTCAAAGAAGTCTTTAAAAAGGTGTTTATTCACGCAGGATTAAAAGGGAAACCCACTGTTCTGATGGTTCCCAATTTAAACATAGAACAA
Seq C2 exon
GACTCATTTTTAGAAGATTTGAACTACATCATCAGTTCAGGAAGAATACCTGACCTGTTTGAAAATGTTGAGCTGGATTCTATTGCAATGAAAATCAGATATCTTACTGAACAATCTGGTCATATGGATAATAGGCAATCTTTACTTTCATTCTTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'79-87,'79-86,82-87=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(10.9=43.9),PF127802=AAA_8=PU(10.0=45.6)
A:
PF127802=AAA_8=FE(24.7=100)
C2:
PF127802=AAA_8=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCTGACAGGACTGTTG
R:
TGCAATAGAATCCAGCTCAACA
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)