HsaEX6037020 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225355641-225380613:+
Coord C1 exon
chr1:225355641-225355730
Coord A exon
chr1:225372993-225373127
Coord C2 exon
chr1:225380398-225380613
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATCTGTAAATTTTGTTTTAGGTT
3' ss Score
10.08
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAAGTAATATATACTGCAACTCAGCAATTGGGTTTACAAAACTGGTCATCTCAGAAAGAGAAGATTATACAGTTTTATAATCAACTTCAG
Seq A exon
GTTTGTGTTGGTGTGATGTTAGTGGGCCCAACAGGTGGAGGAAAGACAACAGTCAGAAGAATTTTGGAAAAAGCATTAACGCTATTACCAATTGCAGACTTCTTATCAGTTGCAGAAAGAAAATCTGCTTCAAAG
Seq C2 exon
ATTTCAGAAAGAAAAGGAAAAGTAGATATTTGTGTTTTAAATCCAAAGTGTGTCACTCTCAGTGAACTATATGGACAACTGGATCCTAATACTATGGAATGGACTGATGGATTATTATCAGCAACAATTCGAAGTTATGTATATTTTAACACACCAAAGAACACAAAGAAAGACATTGATCTCAGACTAAAGTCAAGAATCTCAGATTTATCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-'58-66,'58-65,60-66=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAACTCAGCAATTGGGT
R:
GTCTTTCTTTGTGTTCTTTGGTGTGT
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)