HsaEX6040478 @ hg19
Exon Skipping
Gene
ENSG00000165416 | SUGT1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987]
Coordinates
chr13:53233314-53236837:+
Coord C1 exon
chr13:53233314-53233384
Coord A exon
chr13:53235610-53235705
Coord C2 exon
chr13:53236784-53236837
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTAATTTTTGTATTTTTAGTAG
3' ss Score
3.6
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AATATGTGAATACCATGAAAAAAACTATGCTGCTGCCCTAGAAACTTTTACAGAAGGACAAAAATTAGATA
Seq A exon
TAGAGACGGGGTTTCATCGTGTTGGCCAGGCTGGTCTCCAACTCTTGACCTCAAGTGATCCACCTGCCTTGGACTCCCAAAGTGCTGGGATTACAG
Seq C2 exon
GTGCAGATGCTAATTTCAGTGTCTGGATTAAAAGGTGTCAAGAAGCTCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(45.3=100)
A:
NO
C2:
PF134141=TPR_11=FE(34.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTATGCTGCTGCCCTAGAA
R:
CATTCTGAGCTTCTTGACACCT
Band lengths:
103-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)