HsaEX6042625 @ hg19
Exon Skipping
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20791515-20810673:-
Coord C1 exon
chr16:20810585-20810673
Coord A exon
chr16:20802172-20802254
Coord C2 exon
chr16:20791515-20792056
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGAGGCTGTCCTCTTTCTAGGGT
3' ss Score
7.9
5' ss Seq
TGGGTATTT
5' ss Score
3.4
Exon sequences
Seq C1 exon
GGTTGGACGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGAGATGGTTGTGTAATGAAAATTACAAGGTCGTTGAACAAG
Seq A exon
GGTCCCTTCCTCTTGCCTTCGTGGACCTGGAACAGTGATCTGGCCTCAGGGGACCAGCATGCTTTTCTTCAGCAAGAATTTGG
Seq C2 exon
GTGTGGCTGTCACTGGCATGTCTGCAAAGGAAAAACTACAATGACTGCATGTTAAACACAGCATCACAGACTGTTACCACTGAAAAATTTTGAGAAGCTCTCCACTTGAACCTCTTCATGTCATGAATCAGGTGCCAGTGGCTTAGCTTGAATTACAGGGTAAAAGCCATCACTTTCTCTATCCTTTTAGGTGCTTTCTAGAATCAAAACTAAACTTTGTCATCAAAGGCCCATTTATAATAGCTGCTTTCCTAGCTTTTTATTCTATGATAAAGAAGGATTGAAGCATTTTTAAAACTTGAGATTTTTATCATACCTCCAGCAGAGTAAGGAGTCTGTGTGATCTTGCAATCATGGATAAGGAAGAATTTTCCCCTTCCCTCCCCTATGGATGCTTTAAAATGTGATTTTTTAAAAATGAGTATGTTAATACAATACATGTTAGTAAAAGCCATGGGTACTGATGGGCCAACACACTACAGCCTACTGGCAAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-'10-15,'10-13,14-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NO
C2:
NO


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCCTTCTTGCTTGGAAA
R:
AGGTTCAAGTGGAGAGCTTCTC
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)