Special

HsaEX6042625 @ hg19

Exon Skipping

Gene
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:30541]
Coordinates
chr16:20791515-20810673:-
Coord C1 exon
chr16:20810585-20810673
Coord A exon
chr16:20802172-20802254
Coord C2 exon
chr16:20791515-20792056
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGAGGCTGTCCTCTTTCTAGGGT
3' ss Score
7.9
5' ss Seq
TGGGTATTT
5' ss Score
3.4
Exon sequences
Seq C1 exon
GGTTGGACGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGAGATGGTTGTGTAATGAAAATTACAAGGTCGTTGAACAAG
Seq A exon
GGTCCCTTCCTCTTGCCTTCGTGGACCTGGAACAGTGATCTGGCCTCAGGGGACCAGCATGCTTTTCTTCAGCAAGAATTTGG
Seq C2 exon
GTGTGGCTGTCACTGGCATGTCTGCAAAGGAAAAACTACAATGACTGCATGTTAAACACAGCATCACAGACTGTTACCACTGAAAAATTTTGAGAAGCTCTCCACTTGAACCTCTTCATGTCATGAATCAGGTGCCAGTGGCTTAGCTTGAATTACAGGGTAAAAGCCATCACTTTCTCTATCCTTTTAGGTGCTTTCTAGAATCAAAACTAAACTTTGTCATCAAAGGCCCATTTATAATAGCTGCTTTCCTAGCTTTTTATTCTATGATAAAGAAGGATTGAAGCATTTTTAAAACTTGAGATTTTTATCATACCTCCAGCAGAGTAAGGAGTCTGTGTGATCTTGCAATCATGGATAAGGAAGAATTTTCCCCTTCCCTCCCCTATGGATGCTTTAAAATGTGATTTTTTAAAAATGAGTATGTTAATACAATACATGTTAGTAAAAGCCATGGGTACTGATGGGCCAACACACTACAGCCTACTGGCAAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-'10-15,'10-13,14-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0092919=RNase_T=PD(5.8=36.7)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCCTTCTTGCTTGGAAA
R:
AGGTTCAAGTGGAGAGCTTCTC
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains