HsaEX6046107 @ hg19
Exon Skipping
Gene
ENSG00000206503 | HLA-A
Description
major histocompatibility complex, class I, A [Source:HGNC Symbol;Acc:4931]
Coordinates
chr6:29912836-29913661:+
Coord C1 exon
chr6:29912836-29912868
Coord A exon
chr6:29913011-29913058
Coord C2 exon
chr6:29913228-29913661
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTGTTCTACCCCAGGCA
3' ss Score
9.83
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATAGAAAAGGAGGGAGTTACACTCAGGCTGCAA
Seq A exon
GCAGTGACAGTGCCCAGGGCTCTGATGTGTCCCTCACAGCTTGTAAAG
Seq C2 exon
TGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGAGTTGTTCCTGCCCTTCCCTTTGTGACTTGAAGAACCCTGACTTTGTTTCTGCAAAGGCACCTGCATGTGTCTGTGTTCGTGTAGGCATAATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCACCATGACCCTCTTCCCACGCTGACCTGTGCTCCCTCCCCAATCATCTTTCCTGTTCCAGAGAGGTGGGGCTGAGGTGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTATTAAAATTAGAACCTTAGTATAAATTTACTTTCTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206503-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=FE(39.3=100)
A:
PF066236=MHC_I_C=PD(53.6=88.2)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTACACTCAGGCTGCAA
R:
CGAACACAGACACATGCAGGT
Band lengths:
137-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)