HsaEX6046108 @ hg19
Exon Skipping
Gene
ENSG00000206503 | HLA-A
Description
major histocompatibility complex, class I, A [Source:HGNC Symbol;Acc:4931]
Coordinates
chr6:29912277-29913058:+
Coord C1 exon
chr6:29912277-29912393
Coord A exon
chr6:29912836-29912868
Coord C2 exon
chr6:29913011-29913058
Length
33 bp
Sequences
Splice sites
3' ss Seq
AGGACATTTTCTTCTCACAGATA
3' ss Score
7.81
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGCTGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGATCACTGGAGCTGTGGTCGCTGCCGTGATGTGGAGGAGGAAGAGCTCAG
Seq A exon
ATAGAAAAGGAGGGAGTTACACTCAGGCTGCAA
Seq C2 exon
GCAGTGACAGTGCCCAGGGCTCTGATGTGTCCCTCACAGCTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206503-'14-20,'14-18,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.833 C2=0.059
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PU(3.6=2.2)
A:
PF066236=MHC_I_C=FE(39.3=100)
C2:
PF066236=MHC_I_C=PD(53.6=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATTGCTGGCCTGGTTCT
R:
GAGGGACACATCAGAGCCCT
Band lengths:
118-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)