HsaEX6046308 @ hg38
Exon Skipping
Gene
ENSG00000213719 | CLIC1
Description
chloride intracellular channel 1 [Source:HGNC Symbol;Acc:HGNC:2062]
Coordinates
chr6:31736262-31739763:-
Coord C1 exon
chr6:31739729-31739763
Coord A exon
chr6:31739264-31739388
Coord C2 exon
chr6:31736262-31736350
Length
125 bp
Sequences
Splice sites
3' ss Seq
TATTTAAACCCTTCAAGCAGAGG
3' ss Score
2.34
5' ss Seq
GAGGTATCT
5' ss Score
7.27
Exon sequences
Seq C1 exon
GGATTTGATTGGCGCAGTGGGAAGCCCGCGAGAAG
Seq A exon
AGGTGGAAGCATTCGAATTACATCAAATTCTGGCAGAGAGAAGTAGTTCTGATCAGAACACTCACACCCCTACTGGGACATGCCCATACCCCTTCGCACTTCTACACACCCCTGAAGACAGAGAG
Seq C2 exon
CCCCTCCCAGTTCCCCCAGGGACGGCCACTTCCTGGTCCCCGACGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213719-'0-8,'0-0,3-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGATTGGCGCAGTGGGAA
R:
ACAATTCGACCTGCGGTTGTT
Band lengths:
114-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains