HsaEX6047961 @ hg19
Exon Skipping
Gene
ENSG00000188107 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:21555]
Coordinates
chr6:66005756-66012904:-
Coord C1 exon
chr6:66012701-66012904
Coord A exon
chr6:66010740-66010831
Coord C2 exon
chr6:66005756-66006012
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTTTTATCTGTGCGAACAGCCT
3' ss Score
6.13
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CATCATCATCTGCAGCATTAATTACAACTGGTGGATGCTTGGGGCTAGGAACATTTTCGGAACTTTCTACTTTCATAACGCTCCGCAGCTGAGGGGAAGGATTGGACTGGACAGACAATTTGTTCTGCTGAACTGAAAGTTGGCTAGCCTTCACTTCCTCTTCTGGTGACTCAGGCACAGTGGGCAACACACTTTTGCTCGGAG
Seq A exon
CCTGTTCCATTCTTGAGCAATACACAGAGCCCAGGGATGTGGTGCAATACTACAGAGGAGAAATTAAGTAAAAATCTACTCCCAAAACAAAG
Seq C2 exon
ATGCAGCTGTTCTCTTAGTTACATTGGCAGATTGTGTGTTGTCAATGTTGACTATTGCTTAGGGAACCACAGTATATCAGTGCATGGCCTCTGCCTGGCCCTTTCGCACAATTGTAACTGTAGCGGTCTGCAAAGATATGAAAGGAACATCTGTGAGATAGATACTGAAGACTGCAAATCTGCGTCCTGCAAAAATGGAACAACTAGTACACATTTAAGGGGATATTTCTTCCGCAAGTGTGTCCCAGGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188107-'17-18,'17-17,18-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000822=EGF=PD(35.5=12.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAGCCTTCACTTCCTCT
R:
TACAATTGTGCGAAAGGGCCA
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)